MMDE-Wiki
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Experimental Design
Sample Preparation
Sequencing Library Preparation
OTU Clustering
PICRUSt
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Minnesota Microbiome Data Engine Wiki
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Minnesota Microbiome Data Engine Wiki
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Amplicon Sequencing
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Experimental Design
High-diversity samples
Low-diversity samples
Sample Preparation
Sample Collection
DNA extraction
Sequencing Library Preparation
Library Types
OTU Clustering
Process
Running at MSI
Running on a Mac or Linux computer
PICRUSt
Installing PICRUSt
Running PICRUSt
Shotgun Sequencing
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Guidelines for shotgun metagenomic sequencing will be developed in the future.
The Minnesota Microbiome Data Engine Wiki is developed and maintained by
Dan Knights Lab
University of Minnesota Genomics Center
University of Minnesota Informatics Institute
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